Saturday, December 10, 2011

Info for the Final Exam



Hello Everyone,

Here is an update on your final exam (scheduled Monday December 10 from 1:30 to 4:00)

I have posted the presentations into the 6 thematic areas- water, future, food production, biodiversity, waste disposal, and recreation and ecology.

On the final exam you will be asked to-

1) ask an essay question for each of the 6 thematic area. These questions should prompt a knowledgeable student to make think deeply about the topic, and more importantly, force them to make connections they wouldn't have before.

I realize this assignment might seem a bit vague to some of you. Here are some examples of the types of questions that I would like to see.

a) Imagine that you have been chosen as “Environmental Advisor to the World”. What are the three most important issues that you would like the world to think about and what would you like people to know about those issues?

b) World population just passed 7 billion people and most news outlets "claimed" that the 7 billionth person was born in a developing nation. Why would they make this claim? Discuss how the life conditions facing a child born in a developing country would differ from that of a child born in the developing country.

c) A recent opinion poll noted that 38% of American citizens think that humans are causing global climate change whereas 62% either do not think climate change is happening or do not agree that humans are involved. Discuss the reasons for the disparity of opinions among the American population.

I hope these examples help a bit.

2) answer two of these questions. I will let you know on Monday which questions I want you to answer.

Professorial Pleading- I know that you are all over-achieving Honors students and I am glad that you want to perform well on this exam, BUT please don't spend a lot of time before the exam writing the answers to your questions!! There will be plenty of time for you to answer your questions during the exam period.

Feel free to bring your laptops if you would like to type your essays. If you prefer to write your answers then perhaps it will be easier if you bring your own lined paper (either blue book or free pages will be fine)

If you have any questions please let me know (by email).

Issues Raised in Student Presentations- Recreation and Ecology



Note added Sunday at 12:10PM: This link appears to be active now! Thanks Emily!


http://prezi.com/fef2gemvyxwb/present/?auth_key=pj1pqh4&follow=useufs-bdaeh#0

Issues Raised in Student Presentations- Biodiversity



Deforestation

http://www.slideshare.net/MarkMcGinley/deforestation-tiffany-partain

http://www.slideshare.net/MarkMcGinley/deforestation-chris-zysk

Invasive Species

http://www.slideshare.net/MarkMcGinley/invasive-species-seth-knochel

Don't forget about Sarah's invasive squirrels

Cool Insects

http://www.slideshare.net/MarkMcGinley/scale-disease-maggie-jordan

Issues Raised in Student Presentations- Waste Disposal



Landfills

http://www.slideshare.net/MarkMcGinley/landfills-atia-amatullah

Medical Wastes

http://www.slideshare.net/MarkMcGinley/medical-wastes-evelynn-hoang

Issues Raised in Student Presentations- Food Production



GMOs

http://www.slideshare.net/MarkMcGinley/geneticall-modified-crops-jessica-schacherer

http://www.slideshare.net/MarkMcGinley/genetically-modified-food-jay-karri

Organic Foods

http://www.slideshare.net/MarkMcGinley/organic-foods-beth-daws-10543266

Issues Raised in Student Presentations- Transportation and Energy in the Future



Transportation

http://www.slideshare.net/MarkMcGinley/the-future-of-transportation-briony-haecten

Energy

Fossil Fuels

http://www.slideshare.net/MarkMcGinley/fossil-fuels-trey-cram

http://www.slideshare.net/MarkMcGinley/hydraulic-fracturing-brett-james

Solar Power

http://www.slideshare.net/MarkMcGinley/solar-panels-mamie-gao

Nuclear

http://prezi.com/b49gja6mck7u/nuclear-power/

http://www.slideshare.net/MarkMcGinley/nuclear-technologies-alan-bullick

Issues Raised in Student Presentations- Water


http://www.slideshare.net/MarkMcGinley/the-waters-of-israel-tristan-holaday

Tuesday, December 6, 2011

Need A Study Break?


Here is a link to a video entitled "Queen of Trees" about the African sycamore fig tree and the animals that depend on it. It contains stunning videography and some really cool ecology as well.

Check it out when you need to take a short break.

http://www.youtube.com/watch?v=zQkw6Ux7Fyg&feature=related

Monday, November 7, 2011

Cool Video


Here is a link to a video that Briony sent me to (thanks!!!). It uses a cool, dynamic graphical approach to examine changes in income, health, and population size in 200 countries over the past 200 years. I bet you never thought that graphs could be so fun!!

http://talkingpointsmemo.com/archives/2010/12/200_years_in_4_minutes.php

Enjoy and share with your friends, families, enemies, and people that you don't even know.

Friday, November 4, 2011

Student Presentations


November

14
Brett
Tristan

16
Sarah- Effects of squirrels on urban ecosystems
-

18
Tiffany
Chris

21
Mamaie
Atia

28
Jay
Briony

30
Eric
Jessica

December

2
Seth
Evelyn

5
Alan
Emily- Recreation and the environment

7
Beth
Maggie (Briony signed you up- so don't blame me)

The Physical Environment


Introduction

The physical environment can have a profound influence on ecology at a variety of levels. For example, the physical environment can act as a strong selective presssure to produce adaptations or can influence the rates of nutrient cycling through an ecosystem. For our simple purposes here, the two most important components of the physical environment are temperature and precipitation. I suggest that we can predict a lot about what is going on ecologically in an environment if we know something about temperature and precipitation patterns.

From watching the nightly news we all know how difficult it is for the local weatherperson to accurately predict what the weather is going to be like tomorrow. Fortunately, it is much easier to understand broad patterns of variation in temperature and precipitation.

Temperature



The dominant global temperature pattern is that it tends to get cooler as you move away from the poles. The cause of this is relatively simple. Because the earth is so far from the sun, the light rays hitting the earth are basically paralell to each other. Because of the curvature of the earth, sunlight hitting the earth near the equator falls over a smaller area than sunlight hitting near the poles. Because the same amount of light energy is hitting a smaller area near the equator, the concentration of energy/area is greater near the equator than the pole thus resulting in higher temperatures.

Elevation is another factor that influences global temperatures. Because there is less insulating atmosphere above areas of high elevation temperatures tend to decrease as you go up in elevation.

Large bodies of water can mediate temperature variations. For example, seasonal and daily variation in temperatures are much lower in areas near the ocean (maritime climates) than they are in areas far from the ocean (continental climates).

Global temperature patterns can also be affected by patterns of ocean circulation. For example, the west coast of continents are often cooled by cool water flowing from the poles to the tropics while the east coasts of continents can be warmed by warmer water from the tropics to the poles (e.g., the Gulf Stream). If you have ever been to the beach in southern California you surely noticed how cold the water was; east coast beaches at similar latitudes have much warmer water.

Precipitation

In order to understand global precipitation patterns you need to understand global patterns of atmospheric circulation. Hopefully, after studying the article on atmospheric circulation you will be able to explain-

1. why there tends to be high precipitation in tropical regions and

2. why precipitation tends to be low at 30 degrees North and South of the equator.

Patterns of precipitation can also be influenced by the presence of mountains. As air masses containing moisture hit a mountain they are forced upward. Because rising air cools and cool air







holds less moisture, precipitation occurs on the windward side of mountains. Once the air mass has passed over the mountain in falls to lower elevations and gets warmer. Because most of the moisture has been lost as precipitation on the windward side of the mountain and the warmer air holds more moisture there is very little precipitation on the leward side of the mountain resulting in a "rainshadow desert".

Let's think about Lubbock!

Let's see if we can use our newfound understanding of some of the factors influencing temperature and precipitation to make predictions about what the climate should be like in Lubbock. What information do we need about the geographic location of Lubbock to help us understand the climate? First, we need to know the latitude; Lubbock is located approximately 33 degrees north. Second we need to know something about the proximity to the ocean. As an old beach boy, I can guarantee you that we are a long, long way from the ocean in Lubbock. Third, where is Lubbock in relation to mountains? Lubbock is located to the east of the southern extension of the Rockies.

Why is all of this important?

1. What can we learn from the latitude of 33 degrees North? This latitude is still close enough to the equator to be warm so we expect relatively high temperatures. Because Lubbock lies near the 30 degree zone of low precipitation we would predict relatively low precipitation. At 30 degrees North we would predict that Lubbock would receive predominately winds from the west.

2. From the continental location of Lubbock we would predict fairly extreme daily and seasonal fluctuations of temperatures.

3. Because Lubbock lies in the Westerlies most of the precipitation that is arriving in Lubbock comes from the Pacific Ocean. Because these winds have passed over the Rockies we would predict that Lubbock would lie in a rainshadow, again causing low precipitation.

How did we do. If anyone has ever been in Lubbock (especially in the spring time) you would know that the wind almost always blows in from the west. Temperatures are relatively warm but there is fairly large seasonal and daily variations in temperature. Lubbock has a semi-arid climate and receives on average about 18 inches of precipitation per year. Thus, with just a little bit of knowlege about the factors that influence global patterns of temperature and precipitation we were able to fairly accurately the climate in Lubbock. Thus, I would expect that organisms native to Lubbock should be well adapted to the low precipitation, continental climate of the region (the short grass prairie was the dominant vegetation type presettlement).

See use these patterns to understand climate in your town (note climate patterns in Texas are complicated in central and eastern Texas becasue of the influence of air masses coming up from the Gulf). Compare the temperature and precipitation of your town with that if very divergent locations around the globe.


Further Reading

If you would like some more detailed information about factors affecting climate and the atmosphere you can check out the Atmosphere Chapter in Michael Pidwirny's online Physical Geography textbook http://www.physicalgeography.net/fundamentals/contents.html.

Powerpoint Presentation

Click here to see the powerpoint presentation "Factors Influencing the Physical Environment".
http://www.slideshare.net/secret/EaVq4nm5KuSsBI

Expected Learning Outcomes

At the end of this course a fully engaged student should be able to

- describe global patterns of variation in temperature and precipitation and be able to explain the causes of these patterns

- for any location in the world, use your knowledge of the factors that affect global patterns to preict the local climate

Monday, October 31, 2011

Happy Birthday 7 Billionth Person




I have spent a lot of time telling you that exponential growth is an unrealistic model of population growth. Interestingly, human populations have experienced exponential-like growth. How can this be?

What makes humans different from other species?

In other species per capita birth rates and per capita deaths rates are density dependent. However, as human populations have increased there has been no corresponding decline in per capita birth rates or increase in per capita death rates. What makes humans different from other species?

Humans have the ability to alter their environment so that they can avoid the density dependent effects on birth and death rates. 1) Humans have increased food production by improvements in agriculture (e.g., irrigation, fertilization, mechanized farming, genetically improved crops). 2) Humans have been able to decrease death rates by improvements in medicine and public health (things as simple as not pooping in the water you drink helps a lot!). 3) Humans have elimnated most human predators (ocassionally, someone gets killed by a shark or a mountain lion).

Where is human population growth occuring?

The rates of human population growth are not the same in all regions. Today, human populations are increasing in size much faster in developing countries (e.g., Mexico, other countries in Central America, Africa, and Southeast Asia) than they are in developed countries (e.g, USA, Canda, Western Europe). The figure at the top of this post shows the patterns of population growth in developed and developing nations.

Thus we see that populations are increasing most rapidly in the countries that are least able to deal with a rapidly increasing population. See "Population Challenges-The Basics" that can be downloaded from the Population Institute's website.
http://www.populationinstitute.org/population-issues/index.php

Human Population Growth Problem?

There is a great deal of debate about whether increasing human populations are a problem or not, and if they are what should be done about it. Unfortunately, we don't have time to discuss this issue in very much detail in class. My personal opinion is that we have too many people consuming too many resources and the last thing that we need are billions more people living on the planet. This is an issue that I am always intersted in talking more about if you would like to chat.

Further Reading

Here is a link to the article "Human Population Explostion" from the EoE.
http://www.eoearth.org/article/Human_population_explosion

7th Billion Person- http://www.thehindu.com/sci-tech/science/article2412108.ece

Really Cool Video

Here is a link to a YouTube video on "World Population" The first minute and a half or so is a little boring, so you can skip over it if you wish. However, I think the animation showing when and where human population growth has been occuring is really cool.

http://www.youtube.com/watch?v=4BbkQiQyaYc

This link contains lots of interesting data- take a look

http://www.worldometers.info/

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- describe patterns of human population growth in developed and developing nations

- discuss some reasons why the pattern of population growth in humans is so different from that in other species

- describe the demographic transition

- discuss their own personal view of human population growth.

Tuesday, October 25, 2011

Population Biology 3. Logistic Growth


We are trying to develop a mathematical model that helps us to understand patterns of population growth. So far our first attempt, the exponential growth model, did not help us to understand population growth (for reasons that I hope that you understand by now).

The "Real" world

In our attemtp to think about population growth in the real world, we attempted to examine how per capitat birth rates and per capitat death rates should vary as population size varies. The model that describes this pattern of growth is known as the logistic growth model. It is important to realize that although this model is much more realistic, and therefore useful to us, than the exponential growth model, the logistic growth model still only exmaines what I call "the theoretical real world". That is, this model applies to our ideas about how populations should generally behave and do not thus relate directly to studying the population sizes of white tailed deer in central Texas or parrot fish on a coral reef in Fiji. These real world situations are much harder to understand than the simple "idealized" populations that I am talking about in BIOL 1404. You can take an Advanced Population Biology course if you want to learn more about how to apply these models to the "real real world".

Logistic Growth

We have discussed why, in the real world, r should decrease as population sizes increase. If this is the case then there is a population size at which the per capita birth rate equals the per capita death rate. We call this population size the carrying capacity.

1) When populations are smaller than the carrying capacity we expect them to increase in size until they reach the carrying capacity.

2) When populations are larger than carrying capacity we espect them to decrease in size untile they reach the carrying capacity.

3) When the population size equals the carrying capacity we expect no change in the size of the population.

The logistic growth equation is a mathematical equation developed by biologists to describe patterns of population growth consistent with the ideas above. Before focusing on the biological isights that we can gain from the logistic growth model (the real purpose of everything we have been doing) it is important to really understand patterns of logistic growth. Hopefully, this powerpoint presentation will help you understand these patterns better.

Powerpoint Presentation

Click here for a powerpoint presentation entitled "Fun With Graphs- Logistic Growth"

http://www.slideshare.net/secret/gyB3cjnSplLw41

Expected Learning Outcomes

By the end of this course a fully engaged students should be able to

- define the carrying capacity
- draw, and interpret the following graphs associated with logistic growth
-how population size changes over time in logistic growth when the initial population size is much smaller than the carrying capacity
-how the population size changes over time in logistic growth when the initial population size is much larger than the carrying capacity
-how population growth rate changes over time in logistic growth when the initial population size is much smaller than the carrying capacity
-how the population growth rate changes over time in logistic growth when the initial population size is much larger than the carrying capacity
-how the per capita growth rate varies over time in logistic growth
-how the population growth rate varies over time in logistic growth

- discuss the causes for the shape of the s-curve (this answer will need to include a discussion of both math and biology)

- discuss the factors that regulate population size, be able to distinguish between density dependent and density independent factors that regulate population growth and give examples

Fun With Graphs- Exponential Growth


How do I know which graph to draw?

1) In the population ecology portion of this course we will be discussing two models of population growth- exponential growth and logistic growth. Thus, you need to know which growth model you are describing before you know which graph to draw.

2) You can't draw a graph until you know what the axes are.

Hopefully, this is a review, but it is probably worth talking about. The x-axis (the horizontal axis) is known as the independent variable. The y-axis (the vertical axis) is the dependent variable. Changing the value of the independent variable results in a change in the dependent variable. Id DOES matter which variable goes on which axis so try to get it right.

In population ecology there will be two main independent variables that we are interested in studying. Because we are interested in patterns of population growth, we will often want to observe how variables change over time. Time is always the independent variable, so it always goes on the x-axis. Sometimes we are interested in how parameters depend on population size. In this case, population size is always the independent variable.

Powerpoint Presentation

This powerpoint presentation "Fun With Graphs: Exponential Growth) reviews the graphs you are expected to be able to draw, understand, and interpret.

http://www.slideshare.net/secret/mavlOD8flFs67G

Population Biology 2. Exponential Growth

From our earlier lessons on Population Ecology we learned that the population growth rate (dN/dt) can be calculated as the product of the per capita growth rate (r) and the population size (N).

dN/dt = rN

This is the fundamental equation describing population growth and this equation is always true.

If we want to use this equation to analyze how population sizes change over time, then it makes sense to start by examining the simplest formulation of this equation which occurs when the per capita growth rate is constant. The equation dN/dt = rN when r is constant is known as the exponential growth equation and this equation describes a patter on growth known as exponential growth.

The graph plotting how population size changes over time is shown in the Exponential Growth article. This graph shows an exponential growth curve (sometimes known as the "j-curve"). If you have questions about why the graph has this shape let me know and I will try to explain it more thoroughly.

It is important that you are able to look at this graph and determine all of the information held in the graph. The exponential growth curve allows us to discuss how two parameters change over time- 1) the population size (shown by the x-axis) and 2) the population growth rate (shown by the slope of the line). I find that it is easier to discuss only one parameter at a time so let's start with the population size.

1) Over time, the population size increases (we know this because the line has a positive slope).

Now let's think about the population growth rate.

2) Over time, the population growth rate increases (we know this becasue the line gets steeper over time.

3) Over time, the rate at which the population growth rate increases over time, increases over time (we know this because the slope increases faster and faster over time).

Thus, if populations are growing exponentially then they keep increasing in size at an ever faster rate forever and ever.

Now try this-

Can you draw the following graphs?

1) plot how the population growth rate varies over time.
(hint- we have alredy described what this pattern will look like using words- just turn these words into pictures).

2) plot how the population growth rate depends on population size.
(hint- this graph is a little trickier, but we do have an equation that relates the two variables)

3) plot how the per capita growth rate varies over time.
(hint- think about what the basic assumption we made aboiut exponential growth)

4) plot how the per capita growth rate
(see the hint from number 3)

Exponential Growth is Unrealistic
Because population sizes keep increasing at ever faster rates for ever, exponential growth does not seem to be an accurate description of population growth in most animals, plants, and microbes. If this is an unrealistic model then why did I teach it to you? I started with exponential growth becasue it is the simplest model of population growth and scientists always like to describe the world using the simplest models that they can.

Obviously, in this case we have started with a model that is too simple to realistically describe the world. What is wrong with the exponential growth model? The fundamental assumption we made about exponential growth is that the per capita growth rate is constant. This must not be a realistic assumtpion.

It is important that you understand, and are able to explain, both the mathematical reasons and biological reasons that exponential growth is an unreasonable model of population growth. I tried to explain biologically why exponential growth is unrealistic in the "Exponential Growth" article and the attached Powerpoint presentation so take a look at those.

Suggested Readings

Here are some articles you should look at from the Encyclopedia of the Earth. I wrote these so they are brilliant!!!

Population Ecology http://www.eoearth.org/article/Population_ecology

Exponential Growth http://www.eoearth.org/article/Exponential_growth

Logistic Growth http://www.eoearth.org/article/Exponential_growth

Carrying Capacity http://www.eoearth.org/article/Carrying_capacity

Intraspecific Competition http://www.eoearth.org/article/Intraspecific_competition

Powerpoint Presentation

Click here for the Powerpoint presentation "Why is Exponential Growth Unrealistic?"
http://www.slideshare.net/secret/IDPugQtl2wvONv

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- draw and interpret the following graphs associate with exponential growth

a) how population size change over time in exponential growth

b) how population growth rate varies over time in exponential growth

c) how the population growth rate depends on the population size

d) how per capita growth rate changes over time in exponential growth

e) how per capita growth rate depends on population size

- explain why exponential growth is an unrealistic pattern of growth for most species

- define and explain the carrying capacity

Population Biology 1. Basic Parameters


Here is a brief introduction to some of the important parameters that we will need to understand to be able to study population ecology. For each of the parameters it is important that you know (1) the name of the parameter, (2) the algebraic symbol used to represent the parameter, (3) the units of measurement for the parameter, (4) how to calculate the parameter, and (5) how to describe (in words) what a particular value of that parameter means.

It is probably easiest for me to introduce these concepts using an example.
Imagine that in a population of 100 elephants that in one year 10 elephants are born and 5 elephants die.

1) Population Size (N) units- individuals. Measures the number of individuals in a population.

N = 100 individuals

In this population, there are 100 elephants.

2) Population Birth Rate (B) units- number of births per time. Measures the number of births per time that occur in a population.

B = 10 births/year

In this population, each year there are 10 births.

3) Population Death Rate (D) units- number of deaths per time. Measures the number of deaths per time that occur in a population.

D = 5 deaths/year

In this population, each year there are 5 deaths.

4) Population Growth Rate (dN/dt) units- number of idividuals per time. Measures the rate of change of the population size.

dN/dt = B - D

dN/dt = 10 births/year - 5 deaths/year = 5 individuals/year

In this population, the population size increases by 5 individuals each year.

5) Per Capita Birth Rate (b) units- births per time per individual. Measures the number of births per time averaged across all members of the population.

b = B/N

b = (10 births/year)/100 individuals = 0.10 births/year/individual

In this population, each year 0.10 babies are born for each individual in the population.

6) Per Capita Death Rate (d) units - deaths per time per individual. Measures the number of deaths per time averaged across all members of the population.

d = D/N

d = (5 deaths/year)/100 individuals = 0.05 deaths/year/individual

In this population, each year 0.005 individuals die for each individual in the population.

7) Per Capita Growth Rate (r) units = individuals/time/individual. Measure the rate of change in population size averaged across all individuals. The per capita growth rate can be calcuated two ways.

a) r = b - d

r = 0.10 births/year/individual - 0.05 deaths/year/individual = 0.05 ind/year/ind

b) r = (dN/dt)/N

r = (5 individuals/year)/100 individuals = 0.05 individuals/year/individual

In this population, each year 0.05 individuals are added for each individual in the population.

Practice Problem

In a population of 50 tigers, in one year 10 tigers are born and 20 tigers die. What is B, D, dN/dt, b, d, r?

Readings


Population- http://www.eoearth.org/article/Population

Population ecology- http://www.eoearth.org/article/Population_ecology

Population growth rate- http://www.eoearth.org/article/Population_growth_rate

Exponential growth- http://www.eoearth.org/article/Exponential_growth

Logistic growth- http://www.eoearth.org/article/Logistic_growth

Carrying capacity- http://www.eoearth.org/article/Carrying_capacity


Expected Learning Outomes

By the end of this course a fully engaged student should be able to

- define and calculate the value of basic population ecology parameters

- draw and interpret the following graphs

a) how population size changes over time in exponential growth

b) how population size changes over time in logistic growth

- explain why exponential growth is an unrealistic pattern of growth for most species

- define and explain the carrying capacity

- discuss the factors that regulate population size, be able to distinguish between density dependent and density independent factors that regulate population growth and give examples

Friday, October 21, 2011

Midterm Exam!



Here is your midterm exam. The exam is due in class on Monday. You may use your notes or any other written sources of information. Please do not discuss the exam questions with any classmate or other people (i.e., you can't call Dr. Tilman to ask him about ZNGIs). Good luck.

1. (20 points)

We used Tilman's model to try to understand the conditions under which it is possible for two competing species to coexist. Define- ZNGI, consumption vector, supply vector, and resource supply point and discuss why a knowledge of all 4 of these components is necessary if we are to understand when coexistence is possible.

2. (30 points)

Many plants and animals are involved in mutualistic relationships with microorganisms. Why are mutualisms between animals/plants and microorganisms likely to be more common than mutualisms between two species of animals, two species of plants, or an animal and a plant?
Be sure to think about both the origin and the maintenance of the mutualism in your answer.

3. (30 Points)

Discuss at least two environmental problems that arise as a result of humans altering nutrient cycles.

4. (20 points)

Discuss why niche partitioning might be easier for animals than for plants.

Wednesday, October 19, 2011

Disturbance Ecology

The approach that community ecologists use to understand patterns of biodiversity depends on whether they think that communities are full (i.e., member of communities is limited by biotic interactions such as competition and predation) or whether communities are not full. The "equilibrial approach" to understanding community structure assumes that community membership is limited by competition. Thus, to understand the number of species in a community it will be necessary to understand the number of potential distinct niches. The "non-equilibrial approach" assumes that some procese or processes (such as predation or disturbance) have limited competitive exclusion.

Disturbance Ecology

Ecological disturbances are one example of a process that can limit competitive exclusion. If a disturbance disrupts population growth of a superior competitor, then the population size of the superior competitor may not get large enough to competitively exclude other species.

Powerpoint Presentation

http://www.slideshare.net/secret/GH30nvAxRaF4P


Further Reading

1) Here is a link to a chapter entitled - The response of animals to disturbance and their roles in patch generation. that Mike Willig and I wrote for a book Ecosystems of Disturbed Ground. The first portion of this chapter talks about our view of disturbance the second discusses some of my research in Texas.

http://hydrodictyon.eeb.uconn.edu/people/willig/Willig_pdf/094.Willig&McGinley.1999.pdf

2) The Fire Ecology Factsheet- http://www.eoearth.org/article/Fire_ecology_fact_sheet


Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- define disturbance
- list examples of disturbances
- distinguish between a disturbance and a disaster
- discuss the characteristics of a disturbance regime
- discuss some adaptations of organisms to disturbances
- discuss why disturbances are natural parts of many ecosystems
- discuss the intermediate disturbance hypothesis

Tuesday, October 4, 2011

Tilman's Model



Slideshow

http://www.slideshare.net/MarkMcGinley/tilmans-model-of-competition-for-two-resources

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

1)define ZNGI, consumption vector, supply vector, resource supply point

2)determine the outcome of competition when provided with information about ZNGIs, consumption vectors, and resource supply point.

3) distinguish between a stable and unstable equilibrium and be able to discuss why stable equilibria are particularly important outcomes from these models.

Competition in Animals and Plants



Readings

Competitive Exclusion Principle http://www.eoearth.org/article/Competitive_exclusion_principle

Resource Partitioning and Why It Matters
http://www.nature.com/scitable/knowledge/library/resource-partitioning-and-why-it-matters-17362658

Slideshow

http://www.slideshare.net/MarkMcGinley/competition-in-animals-and-plants

Expected Learning Outcomes

By the end of this course a full engaged student should be able to

1) discuss the relationship between the fundamental and realized niche

2) discuss some ways animals can partition niches

3) define and describe character displacement

4) discuss why plants and animals may not be able to partition niches in the same way

5) explain Tilman's R* model

Is this the coolest wildlife video ever? From Kruger Park in South Africa


One of my former students sent me a link to this video. It seems like almost everything that we have talked about so far is going on in this video. The highlight of my biology life was visiting Kruger Park when I was about 13 (how sad to peak so young). I saw lots of amazing animals, but I didn't see anything like this. Enjoy! Make sure you watch all the way through- it just keeps getting better.

http://www.youtube.com/watch?v=LU8DDYz68kM

Monday, October 3, 2011

Writing Assignment #2: Ecosystem Services



Readings

Classic Paper

The value of the world’s ecosystem services and natural capital by Costanza et al.
NATURE |VOL 387 | 15 MAY 1997

http://www.uvm.edu/giee/publications/Nature_Paper.pdf

Value of the world’s ecosystem services: the influence of a single paper
http://www.eoearth.org/article/Value_of_the_world%C3%83%C2%A2%C3%82%C2%80%C3%82%C2%99s_ecosystem_services%3A_the_influence_of_a_single_paper

Other Readings

Biodiversity and ecosystem services- http://www.eoearth.org/article/Biodiversity_and_ecosystem_services

Marine ecosystem services- http://www.eoearth.org/article/Marine_ecosystem_services

Ecosystem services and human well-being synthesis: summary for decision-makers.
http://www.eoearth.org/article/Ecosystems_and_Human_Well-being_Synthesis:_Summary_for_Decision-makers

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- define ecosystem services

- discuss the variety of services provided by the environment

- discuss how scientists have attempted to determine the monetary value of ecosystem services

Writing Assignment #2

After reading the materials on ecosystem services, write an article (3 page max, double spaced) discussing ecosystem services that could be published in the Lubbock Avalanche Journal.

Dates (note changes): First Draft due Friday October 7th. We will workshop the papers on Wednesday October 12th and the final papers will be due on Monday October 17th.

Thursday, September 15, 2011

More Mutualisms- Plant Rhizobium Interactions



Required Readings

Rhizobia-http://en.wikipedia.org/wiki/Rhizobia

Scientific Literature

Here are some papers from the scientific literature examining this system. If you are interested then take a look at some of these papers. I don't expect you to understand everything in these papers, but I would like you to see the diversity of approaches that moderm scientists are using to study this system.

Lifestyle alternatives for rhizobia: mutualism, parasitism,
and forgoing- symbiosis
http://people.umass.edu/lsadler/adlersite/kiers/Alternativelifestyles1.pdf

Host sanctions and the legume–rhizobium mutualism-
http://www.nature.com/nature/journal/v425/n6953/abs/nature01931.html (then click on "full text")

A mechanistic molecular test of the plant-sanction hypothesis in legume–rhizobia mutualism
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VR3-4WPS9PP-1&_user=2605799&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_searchStrId=1100808123&_rerunOrigin=google&_acct=C000055350&_version=1&_urlVersion=0&_userid=2605799&md5=491bf0585068046d9ae2f49e3bb7a905

Powerpoint Presentation

Plant-Microbe Interactions: Rhizobia/Legumes
http://www.slideshare.net/secret/AZNj5BIH5bqGC8

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- discuss how and why participants in an apparently mutualistic relationship should be "selfish"

- describe the pattern of nodule formation

- discuss the importance of nitrogenase and leghaemogolbin for nitrogen fixation

- discuss circumstances under which plants would like to limit nodulation or nitrogen fixation by rhizobia

- discuss "partner choice" and "santioning" in this system

Mutualisms: Coral Reefs (& a little bit about coral diseases)


Readings

Coral reefs- http://www.eoearth.org/article/Coral_reef

Threats to Coral Reefs-
http://www.eoearth.org/article/Threats_to_coral_reefs

Cnidaria- http://www.eoearth.org/article/Cnidaria

Zooxanthellae- http://www.eoearth.org/article/Zooxanthellae

Global warming takes a toll on coral reefs
http://www.eoearth.org/article/Global_warming_takes_a_toll_on_coral_reefs

Patterns of Caribbean coral loss
http://www.eoearth.org/article/Patterns_of_Caribbean_coral_loss

Coral disease-
http://www.reef.crc.org.au/discover/coralreefs/Coraldisease.htm

Coral stress and disease
http://www.reefrelief.org/Image_archive/diseases/index.shtml

Powerpoint Presentation

http://www.slideshare.net/secret/MXAjnaF502X8PL

Expected Learning Outcomes

By the end of this course a fully engaged student will be able to

- discuss the characteristics or the cnidarian polyps and zooxanthellae that make up a corals

- discuss the "dilema of the inverteed trophic pyramid" and the role that the discovery of zooxanthellae played in solving that mystery

- discuss the mutualism between cnidarian polyps and zooxanthellae

- discuss some of the threats facing coral reefs

- discuss coral bleaching and some of the proposed mechanisms of bleaching

- discuss the characteristics of some of the important coral diseases

Tuesday, September 13, 2011

Community Ecology



Suggested Readings

Community Ecology- http://www.eoearth.org/article/Community_ecology

Competition- http://www.eoearth.org/article/Competition

Interspecific Competition- http://www.eoearth.org/article/Interspecific_competition

Exploitative Competition- http://www.eoearth.org/article/Exploitative_competition

Predation- http://www.eoearth.org/article/Predation

Mutualism- http://www.eoearth.org/article/Mutualism

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- define competition, exploitative competition and interference competition

- identify and explain examples of exploitative and interference competition from a variety of environments

- define predation (narrow and broad sense), herbivory, and parasitms

- identify and explain examples of predation, herbivory, and parasitism from a variety of environments

- identify examples of morphological and behavioral adaptations that animals have to help capture their food

- identify examples of morphological, biochemical, or behavioral adaptations that animals have to protect them from predators

- identify and explain examples of mutualisms from a variety of habitats

- explain the results of Connell's experiment examining competition between two species of barnacles (Fig. 54.3) and Paine's experiment examining predation by the starfish Pisaster (Fig. 54.15)

- define a keystone species and an ecosystem engineer and provide examples of each.

Dead Zones


Required Readings

http://www.mnn.com/earth-matters/translating-uncle-sam/stories/what-is-the-gulf-of-mexico-dead-zone

http://www.smm.org/deadzone/

http://serc.carleton.edu/microbelife/topics/deadzone/

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- define "dead zones"

- discuss the causes of dead zones

- discuss some of the ecological and social problems associated with dead zones

Eutrophication



Required Readings

http://www.eoearth.org/article/Eutrophication

http://www.eoearth.org/article/Hypoxia_fact_sheet

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- define eutrophication

- discuss the causes of eutrophicationb

- discuss some ecological and social results of eutrophication

- discuss mitigation of eutrophication

Friday, September 9, 2011

2011 2nd Warmest Summer on Record in the US



According to NOAA (National Oceanic and Atmospheric Administration), 2011 was the second warmest summer ever recorded in the US.

http://www.noaanews.noaa.gov/stories2011/20110908_auguststats.html

Thursday, September 8, 2011

Governor Rick Perry's Comments on Climate Change at Sept. 7th Debate


Here is a link to a video with Governor Perry's answer to a question about climate change at the Republican Presidential Candidates' Debate on September 7, 2011.

**I am sorry that I couldn't find a clip on youtube that lacked a "comment" in the title of the video- I'll report, you decide ****

http://www.youtube.com/watch?v=eYOQDz9Gt0Q

Ecosystem Services



Readings

Classic Paper

The value of the world’s ecosystem services and natural capital by Costanza et al.
NATURE |VOL 387 | 15 MAY 1997

http://www.uvm.edu/giee/publications/Nature_Paper.pdf



Other Readings

Biodiversity and ecosystem services- http://www.eoearth.org/article/Biodiversity_and_ecosystem_services

Marine ecosystem services- http://www.eoearth.org/article/Marine_ecosystem_services

Ecosystem services and human well-being synthesis: summary for decision-makers.
http://www.eoearth.org/article/Ecosystems_and_Human_Well-being_Synthesis:_Summary_for_Decision-makers

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- define ecosystem services

- discuss the variety of services provided by the environment

- discuss how scientists have attempted to determine the monetary value of ecosystem services

Ecosystem Ecology



Ecosystem ecologists focus on the flow of enery and the cycling of nutrients through the ecosystem.

Further Readings

Ecosystems- http://www.eoearth.org/article/Ecosystem

Ecological energetics- http://www.eoearth.org/article/Ecological_energetics

Nitrogen cycle- http://www.eoearth.org/article/Nitrogen_cycle

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- diagram and discuss the flow of energy through an ecosystem

- diagram, discuss the causes of, and discuss some of the implications of the enegy pyramid

- diagram nitrogen cycle within an ecosystem

- discuss the factors that influence the rate of flow from dead bodies to the soil and discuss the implications of differences in this rate

Wednesday, September 7, 2011

Writing Assignment #1


For this assignment I would like you to choose an audience (parents or other family members, a friend or a group of friends, co-workers. fellow classmates, a ex or current teacher, readers of the Lubbock Avalanche Journal, random people that you meet in the mall, etc.) and then explain your view of global climate change.

These papers should have three parts.

1. A short paragraph describing the audience you have chosen to write for. Provide some background about their currrent knowledge and attitude about the topic and why you chose to communicate to this audience.

2. The main body of the paper where you should explain your views of global climate change to your audience.

3. References that you used to develop your ideas.

Length: The first two sections should be limited to a maximum of three double spaced pages. I suggest that you use Times New Roman 12 point font and normal margins. You may include your references on a separate page.

Due Dates

First Draft- due Friday September 16th at the beginning of class (make sure that you have a STAPLER so that you can staple the pages together (you have just discovered one of my pet peeves!) Bring three copies of the paper to class (one copy for me and two copies for members of your "workshop" group. We will "workshop" your papers in class on Monday and final copies are due on Friday September 23rd at the beginning of class.

It is important that all work is turned in on time! (pet peeve #2)

Thursday, September 1, 2011

Global Carbon Cycle and Climate Change II


Most of the slides from the global climate change portion of this presentation came from Katharine Hayhoe's website (she is a professor in the Tech Political Science Dept and the link to her website is listed on the presentation).

Global Carbon Cycle and Global Climate Change
http://www.slideshare.net/secret/C6iDTujQlIh73C

Further Reading

Climate Change FAQ- http://www.eoearth.org/article/Climate_change_FAQs

Causes of Climate Change- http://www.eoearth.org/article/Causes_of_climate_change

Economics of Climate Change- http://www.eoearth.org/article/Economics_of_climate_change

Mauna Loa Curve- http://www.eoearth.org/article/Mauna_Loa_curve

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- identify the major reservoirs of carbon

- discuss the two most important biological processes that result in a movement of carbon from one reservoir to another

- discuss the three ways that human activity has altered the global carbon cycle

- explain the Mauna Loa Curve

- discuss why climate scientists have concluded that global temperatures have increased

- discuss why cllimate scientists have concluded that this increase in temperature is most likely caused by humans

- discuss some potential consequences of global climate change

Global Carbon Cycle and Climate Change


Further Reading

Reports from the Intergovernmental Panel on Climate Change

A report of Working Group I of the Intergovernmental Panel on Climate Change:
Summary for Policymakers
http://www.ipcc.ch/pdf/assessment-report/ar4/wg1/ar4-wg1-spm.pdf

IPCC- Synthesis Report- http://www.ipcc.ch/pdf/assessment-report/ar4/syr/ar4_syr.pdf

Articles from EoE

Global Warming- http://www.eoearth.org/article/Global_warming

Recent News From Lubbock Avalanche Journal

Thursday's Lubbock Avalanche-Journal had a short piece entitled "Green fiction" that quoted an article published in the Investors Business Daily.
http://lubbockonline.com/editorial-letters/2011-09-01/other-views-green-fiction-and-resenting-poor

The full piece published in the Investors Business Daily, entitled "Watching a green fiction unravel", discussed the results of a recently published paper that they concluded debunked the idea of humans as the cause of climate change.
http://www.investors.com/NewsAndAnalysis/Article.aspx?id=583272&p=1

Interestingly, the actual title of the paper published in the journal Nature is "Role of sulphuric acid, ammonia and galactic cosmic rays in atmospheric aerosol nucleation" and from my reading of the article it mentions nothing about climate change. Take a look and see what you think.
http://www.nature.com/nature/journal/v476/n7361/full/nature10343.html

Wednesday, August 31, 2011

Critical Thinking



Further Reading

Critical Thinking: What is is and why does it count?
http://www.criticalthinking.org/aboutCT/define_critical_thinking.cfm

A Working Definition of critical thinking by Michael Scriven and Richard Paul
http://lonestar.texas.net/~mseifert/crit2.html

Critical Thinking Exercise


There are lots of controversial issues on campus, in Lubbock, in Texas, and in the USA that would allow us to practice our critical thinking skills. However, sometimes I think it is easier to think critically about issues that don't seem to immediately affect us. Thus, I would like us to explore an issue that has been in the news recently that is happening in Malaysia.

Malaysia is a very interesting county. If you would like to know more about Malaysia, their environment, and the people that live there you can check out this powerpoint presentation. This slideshow, which is think is pretty cool, was developed by one of my Natural History and Humanities classes to be used in a 5th grade classroom. Even though it was intended for kids, it still serves as a useful introduction to Malaysia.

http://www.slideshare.net/secret/3JwD4G3hq4RjhQ

Crticial Thinking Exercise

Here is a link to the slideshow that I used in class.

http://www.slideshare.net/secret/9SnjQ9zV1GFQMX

Further Viewing

Malaysian woman to be caned for drinking beer - 23 Aug 09
http://www.youtube.com/watch?v=xnOWgCz5fj4

Further Reading

If you want to learn more about this story then here are links to a couple of CNN and BBC articles. It seems to me that the outcome of this story is still uncertain, so it will be interesting to follow it to see what happens.

Malaysian model, mother to be caned for drinking beer in public
http://www.cnn.com/2009/WORLD/asiapcf/08/20/malaysia.caning/index.html?iref=newssearch

Malaysia postpones woman's caning
http://www.cnn.com/2009/WORLD/asiapcf/08/24/malaysia.model.caning/index.html?iref=newssearch

Malaysia delays caning beer woman
http://news.bbc.co.uk/2/hi/asia-pacific/8217440.stm

Sunday, August 28, 2011

The Hierarchical Nature of Ecology



In order to understand the science behind environmental issues it will be necessary to have a basic knowledge of the science of ecology.

Ecology has been defined in many ways. The definition that I prefer is that "ecology is the scientific study of the interactions between organism and their environment." Organisms interact with two distincly different parts of the environment. The "abiotic (non-living) environment" includes all of the non-living attributes of the environment including water, soil characteristics, temperature, etc. The "biotic environment" includes all of the living organisms and involves interactions such as competition, predation, mutualism, etc.

Hierarchical Organization of Ecology

Ecology can be studied at different hierarchical levels.

1. Individuals have phenotypic characteristics such as morphology (e.g., eye color, height, etc.), physiology (blood type, photosynthetic ability, etc.), and behavior (food preferences, response to stimuli, etc.). We can understand the characteristics of organisms by studying how natural selection has affected those traits.

2. A population is a group of individuals of the same species that live in the same area. Individuals in the same population interact via competition and sometimes predation (e.g., canibalism).

Some species live in very large populations whereas others live in very small populations. Ecologists are interested in understanding the factors that influence population size (this is important because when population size equals zero individuals then a population has gone extinct.)

3. A community is a group of different species living together in the same environment. Interspecific interactions including competition, predation, and mutualisms are some of the most interesting, and most important, aspects of ecology.

4. An ecosystem involves all of the biotic components in a community as well as the abiotic components. Unlike the lower levels of the ecological hierarchy where the focus is on living organisms, ecosystem ecologists are interested in understanding theh flow of energy and nutrients through the ecosystem. Some of the most important environmental issues facing us today are caused by human alteration of these cycles.

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- define ecology

- define individual, population, community, and ecosystem

- diagram and discuss the hierarchical organization of ecology

- discuss examples of how one level of ecology can bge affected by the level above or below it

Reading

Ecology- http://www.eoearth.org/article/Ecology

Organization of Life: Species, Populations, Communities, and Ecosystems in PhysicalGeography.net by Michael Pidwirny
http://www.physicalgeography.net/fundamentals/9d.html

Thursday, August 25, 2011

Brief Introduction to Environmental Issues


Here is a link to the powerpoint presentation I made in class about Environmental Issues and the Earthquake in Haiti.

http://www.slideshare.net/secret/DhiGqDTZBsDIeY

Possibly Useful Reference

Here is a link to an online Environmental Science textbook that is published on the Encyclopedia of Earth. This book is written for an AP Environmental Science class so it is a bit basic, but it is not a bad place to start.

http://www.eoearth.org/article/AP_Environmental_Science_Online_Course

Science



“The whole of science is nothing more than a refinement of everyday thinking.” Albert Einstein

What is Science?

Science is a way of learning about the world. Other ways of learning about the world include philosophy and religion.

Science is differentiated from alternative ways of learning about the world by
1) what it studies
2) how it studies it

(a) Science deals with the natural world and assumes that the world is governed by “natural laws” (I don’t spend too much time worrying about where these laws came from, I just accept that they exist)and (b) science only studies things that can be observed

Religion, on the other hand, deals with the supernatural, so science simply can’t study it.

Scientists learn about the world using the scientific method. Scientists use observations and experiments to test predictions of hypotheses. Thus, data determines “truth” in science. Religious truth often relies on “revelations” not data.

Thus, science and religion differ on what they can study and how they study it. Here is the critical question- which way of learning about the world is best? Any particular method is not the best, they are complementary ways of learning about the world and each works best within its intended boundaries. For example, science has nothing to say about religion, faith, or God.

My suggestion is that if you want to study observable phenomena that take place in the natural world then science is the best approach. We spend our lives surrounded by the applied knowledge that comes from using the process of science.

Think about a couple of examples

1) you come out in the morning and you can’t start your car.

Possible hypotheses
- you left your lights on and the battery has gone dead
- something is wrong with the starter

Where do these hypotheses come from? The knowledge that engines run according the laws of physics and chemistry helps us to understand how they work.

Alternative hypotheses
- you ran over a fairy on the way home last night and they are punishing you
- your neighbor is a witch and has put a hex on your car because your dog barks too much

We are likely to laugh at these alternative hypotheses because we understand the mechanical basis of car problems. Who do you take your car to for repairs- (i) Gus the mechanic (who whether he knows it or not uses his knowledge of physics and chemistry to diagnose what is wrong and repair your car) or (ii) Princess Fatima the Gypsy around the corner? Obviously, we choose Gus.

2) What do you do if you get sick?

The most obvious answer is that you go to the Doctor and do what they tell you. Certainly you might ask people to pray for you or pray for yourself. Some religions (e.g., Christian Scientists) rely on spiritual healing alone and will not take their children to the doctor when they are sick. I doubt that most people around here would support that position.

Readings

What is science? from Understanding Science: How Science Really Works. UC Berkeley
http://undsci.berkeley.edu/article/whatisscience_01

For an interesting discussion of the difference between "belief knowledge" and "research knowledge" check out "What is science?" by Bruce Tiffney from the University of California Museum of Paleontology
http://www.ucmp.berkeley.edu/education/events/tiffney3a.html

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- define science

- distinguish science from other ways of learning about the world

- articulate their personal view of how science relates to their everyday life